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BiteSized Immunology: Organs & Tissues

Bitesized Immunology

Innate immunity in the large intestine

Matthew deSchoolmeester, University of Manchester, UK

The intestine is home to about 100 trillion (1×1014) bacteria, both commensal (“friendly”) and pathogenic. To fight infection quickly the intestine has several innate immune defences designed to act immediately when alerted to danger.

Gut morphology and function

The surface of the intestine is highly folded, forming crypts and villi. Cells move from the base to the tip of the crypt where they are lost into the lumen by anoikis (a kind of apoptosis). The high turnover of epithelial cells can be visualised via the incorporation of  BrdU. It takes 5-7 days to travel from the base to the tip (shown by the arrow). This process is accelerated by Th2 cytokines such as IL-13.

Innate immunity in the large intestine Figure 1.
The rate of epithelial cell turnover and also smooth muscle contraction (peristalsis) often increase in response to infection. This is a physical way of flushing pathogens out of the intestine.

Goblet cells and mucus

Goblet cells are simple columnar epithelial cells which develop from stem cells in the base of the crypt. They contain mucopolysaccharide in secretory granules which expands up to 500-fold after release. LPS from Gram-negative bacteria and Th2 cytokines are goblet cell stimulants. They cause increased expression and exocytosis of MUC5A and 5B.

Mucus protects enterocytes by acting as a physical barrier to the motility and feeding of bacteria and other pathogens such as intestinal parasites. It also contains large quantities of IgA capable of trapping invading bacteria.

Innate immunity in the large intestine Figure 2.
Periodic acid Schiff stains goblet cells in the large intestine pink, blue or purple depending on their acidity. Infection with a nematode parasite causes an increase in goblet cell number. L; lumen, Tm; Trichuris muris.

Innate effector molecules

Produced by goblet and epithelial cells as well as neutrophils and macrophages in response to numerous pathogens. These molecules are not antigen specific and do not exhibit immunological memory.


α- and β-defensins are produced in the intestine and kill a wide spectrum of pathogens in vitro. Low levels of β-defensin-2 are associated with an increased risk of colonic Crohn’s disease.


Only one identified in humans; LL37, which is anti-microbial and binds and neutralises LPS.


A goblet cell molecule associated with expulsion of the nematode parasite Trichuris muris.

Innate immune cells

The large intestine is also home to tissue-resident macrophages, eosinophils and mast cells. Between them these cells can phagocytose pathogens and release toxic and inflammatory mediators such as nitrogen radicals and histamine. Neutrophils are often the first cells recruited to a site of inflammation and phagocytose and destroy pathogens using toxic enzymes such as lysozyme and peroxidase.

Pathogen recognition receptors

These include the TLR and NOD families of receptors. Normally expressed on the basal side of the epithelial layer or even intracellularly to avoid activation by the normal flora, they are ideally placed to alert the immune system to the presence of invading pathogens. Detection of pathogen-associated molecular patterns by these receptors initiates a powerful inflammatory response.

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Innate immunity in the large intestine.ppt (290 KB)
Innate immunity in the large intestine.ppt (290 KB)